Variant report

Variant	rs73089894
Chromosome Location	chr1:226580759-226580760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55897265	1.00[AFR][1000 genomes]
rs73089874	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832781	chr1:226570901-226750697	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226543000-226582800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:226543000-226590800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:226543000-226590800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:226543000-226591400	Strong transcription	Primary T cells from cord blood	blood
5	chr1:226543200-226588600	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:226543200-226588600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:226543400-226590200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:226543400-226591400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:226543600-226590400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:226543600-226591400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:226544200-226590400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:226544600-226591800	Strong transcription	Dnd41	blood
13	chr1:226544800-226590800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:226545000-226590800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr1:226545200-226581000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:226545200-226581200	Strong transcription	Adipose Nuclei	Adipose
17	chr1:226545200-226582600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr1:226545200-226582800	Strong transcription	Duodenum Mucosa	Duodenum
19	chr1:226545400-226581400	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:226545400-226584000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:226545400-226590600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:226545600-226581400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr1:226545600-226582800	Strong transcription	Fetal Thymus	thymus
24	chr1:226545600-226588200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr1:226545800-226581800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr1:226545800-226582600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:226546000-226582600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:226546200-226590600	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr1:226546600-226589400	Strong transcription	K562	blood
30	chr1:226553400-226580800	Strong transcription	Brain Germinal Matrix	brain
31	chr1:226557200-226590600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:226557400-226590200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:226558400-226590200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr1:226559400-226583800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr1:226559800-226588800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr1:226559800-226589200	Strong transcription	GM12878-XiMat	blood
37	chr1:226560400-226582800	Strong transcription	Brain Angular Gyrus	brain
38	chr1:226560400-226584000	Strong transcription	Primary B cells from cord blood	blood
39	chr1:226560600-226582000	Strong transcription	Fetal Kidney	kidney
40	chr1:226563000-226591400	Weak transcription	Stomach Mucosa	stomach
41	chr1:226564200-226590600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr1:226566600-226583600	Strong transcription	HepG2	liver
43	chr1:226566800-226581200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr1:226568800-226591400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr1:226572400-226585400	Weak transcription	Right Atrium	heart
46	chr1:226574200-226584600	Weak transcription	Psoas Muscle	Psoas
47	chr1:226576800-226587000	Weak transcription	Fetal Brain Male	brain
48	chr1:226577400-226584400	Strong transcription	Fetal Muscle Leg	muscle
49	chr1:226577600-226585000	Weak transcription	HSMMtube	muscle
50	chr1:226577800-226583400	Weak transcription	Fetal Heart	heart

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