Variant report

Variant	rs73090017
Chromosome Location	chr4:10458130-10458131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:10142152..10144542-chr4:10456013..10458159,2	K562	blood:
2	chr4:10117460..10124392-chr4:10456675..10465032,17	K562	blood:
3	chr4:10439495..10442453-chr4:10454853..10458527,4	K562	blood:
4	chr17:34890127..34891028-chr4:10458093..10458597,2	HCT-116	colon:
5	chr4:10114078..10122203-chr4:10455501..10461954,12	K562	blood:

Variant related genes	Relation type
ENSG00000071127	Chromatin interaction
ENSG00000223086	Chromatin interaction
ENSG00000141140	Chromatin interaction
ENSG00000184886	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
3	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
4	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
5	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
6	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
7	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
8	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
9	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
10	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
12	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
14	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
15	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
16	nsv1000177	chr4:10212245-10557776	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv537037	chr4:10212245-10557776	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv829858	chr4:10300236-10492716	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
19	esv2757921	chr4:10343699-10545800	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
20	esv2759223	chr4:10343699-10545800	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv593727	chr4:10397327-10694991	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv517971	chr4:10399068-10893253	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv878694	chr4:10407572-10783606	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	esv1811736	chr4:10454409-10467939	Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
25	esv3327627	chr4:10457679-10460227	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
26	esv3524208	chr4:10457904-10460002	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
27	esv3524209	chr4:10457904-10460002	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10456400-10458200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:10456800-10458200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
3	chr4:10457200-10458600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:10457400-10458200	Active TSS	Fetal Brain Male	brain
5	chr4:10457400-10459200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:10457400-10459200	Active TSS	GM12878-XiMat	blood
7	chr4:10457600-10458200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
8	chr4:10457600-10458200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
9	chr4:10457600-10458200	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr4:10457600-10458200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr4:10457600-10458400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr4:10457600-10458400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr4:10457600-10458400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr4:10457600-10458400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:10457600-10458400	Flanking Active TSS	HUVEC	blood vessel
16	chr4:10457600-10458400	Flanking Active TSS	NH-A	brain
17	chr4:10457600-10458600	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr4:10457600-10459200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:10457600-10459200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:10457600-10459200	Active TSS	Fetal Brain Female	brain
21	chr4:10457600-10459200	Active TSS	Right Ventricle	heart
22	chr4:10457600-10459600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:10457600-10459600	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr4:10457600-10459600	Active TSS	Fetal Kidney	kidney
25	chr4:10457600-10459600	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr4:10457600-10460000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr4:10457800-10458200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:10457800-10458200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr4:10457800-10458200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr4:10457800-10458200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr4:10457800-10458200	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr4:10457800-10458200	Flanking Active TSS	Fetal Heart	heart
33	chr4:10457800-10458200	Flanking Active TSS	Fetal Intestine Large	intestine
34	chr4:10457800-10458200	Flanking Active TSS	NHEK	skin
35	chr4:10457800-10458200	Flanking Active TSS	Osteobl	bone
36	chr4:10457800-10458400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr4:10457800-10458400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr4:10457800-10458400	Flanking Active TSS	Fetal Intestine Small	intestine
39	chr4:10457800-10458400	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr4:10457800-10458600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr4:10457800-10458600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
42	chr4:10457800-10459000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:10457800-10459000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr4:10457800-10459000	Active TSS	Brain Hippocampus Middle	brain
45	chr4:10457800-10459200	Active TSS	H9 Cell Line	embryonic stem cell
46	chr4:10457800-10459200	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr4:10457800-10459200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr4:10457800-10459200	Active TSS	Brain Anterior Caudate	brain
49	chr4:10457800-10459200	Active TSS	Thymus	Thymus
50	chr4:10457800-10459200	Active TSS	K562	blood

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