Variant report

Variant	rs7309202
Chromosome Location	chr12:106331064-106331065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11112803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55985768	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56200349	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940147	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61940148	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61942471	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7967359	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971363	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971470	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106324600-106332000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr12:106324800-106332200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:106324800-106332400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:106325200-106332400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:106325400-106336600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:106325600-106335200	Enhancers	HMEC	breast
7	chr12:106327200-106335000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:106328200-106339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:106328600-106335000	Enhancers	NHEK	skin
10	chr12:106329400-106331200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:106329800-106331200	Enhancers	Left Ventricle	heart
12	chr12:106330600-106331800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:106330600-106332200	Enhancers	HSMMtube	muscle
14	chr12:106330600-106334000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:106331000-106332400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:106331000-106332600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:106331000-106337200	Weak transcription	HSMM	muscle
18	chr12:106331000-106337400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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