Variant report

Variant	rs73092120
Chromosome Location	chr1:220496544-220496545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220490409..220493296-chr1:220495769..220497672,3	K562	blood:
2	chr1:220491693..220493296-chr1:220495769..220497470,2	K562	blood:

Variant related genes	Relation type
ENSG00000232883	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10495146	0.81[AMR][1000 genomes]
rs11799636	0.81[AMR][1000 genomes]
rs11803993	0.81[AMR][1000 genomes]
rs11810365	0.81[AMR][1000 genomes]
rs11812073	0.81[AMR][1000 genomes]
rs12561809	0.81[AMR][1000 genomes]
rs12568605	0.81[AMR][1000 genomes]
rs13373856	0.81[AMR][1000 genomes]
rs13373866	0.81[AMR][1000 genomes]
rs13374049	0.81[AMR][1000 genomes]
rs13374288	0.81[AMR][1000 genomes]
rs13375365	0.81[AMR][1000 genomes]
rs1397959	0.81[AMR][1000 genomes]
rs1397960	0.81[AMR][1000 genomes]
rs17007380	0.81[AMR][1000 genomes]
rs17007446	0.81[AMR][1000 genomes]
rs17007454	0.81[AMR][1000 genomes]
rs17007481	0.81[AMR][1000 genomes]
rs17007483	0.81[AMR][1000 genomes]
rs2048479	0.81[AMR][1000 genomes]
rs2048480	0.81[AMR][1000 genomes]
rs2102571	0.81[AMR][1000 genomes]
rs2137114	0.81[AMR][1000 genomes]
rs34368227	0.81[AMR][1000 genomes]
rs34567692	0.81[AMR][1000 genomes]
rs34622636	0.81[AMR][1000 genomes]
rs34870946	0.81[AMR][1000 genomes]
rs4460644	0.81[AMR][1000 genomes]
rs4846312	0.81[AMR][1000 genomes]
rs4846313	0.81[AMR][1000 genomes]
rs4846624	0.81[AMR][1000 genomes]
rs4846625	0.81[AMR][1000 genomes]
rs5015200	0.81[AMR][1000 genomes]
rs5015201	0.81[AMR][1000 genomes]
rs5015202	0.81[AMR][1000 genomes]
rs5015203	0.81[AMR][1000 genomes]
rs5015204	0.81[AMR][1000 genomes]
rs55917547	0.81[AMR][1000 genomes]
rs59417140	0.81[AMR][1000 genomes]
rs60882165	0.81[AMR][1000 genomes]
rs60892757	0.81[AMR][1000 genomes]
rs6541129	0.81[AMR][1000 genomes]
rs6541131	0.81[AMR][1000 genomes]
rs6541132	0.81[AMR][1000 genomes]
rs6541133	0.81[AMR][1000 genomes]
rs6541134	0.81[AMR][1000 genomes]
rs6541135	0.81[AMR][1000 genomes]
rs6541136	0.81[AMR][1000 genomes]
rs6541137	0.81[AMR][1000 genomes]
rs6656323	0.81[AMR][1000 genomes]
rs6657742	0.81[AMR][1000 genomes]
rs6660564	0.81[AMR][1000 genomes]
rs6662971	0.81[AMR][1000 genomes]
rs6663091	0.81[AMR][1000 genomes]
rs6663291	0.81[AMR][1000 genomes]
rs6664646	0.81[AMR][1000 genomes]
rs6671030	0.81[AMR][1000 genomes]
rs6673482	0.81[AMR][1000 genomes]
rs6682177	0.81[AMR][1000 genomes]
rs6682555	0.81[AMR][1000 genomes]
rs6683491	0.81[AMR][1000 genomes]
rs6689931	0.81[AMR][1000 genomes]
rs6690030	0.81[AMR][1000 genomes]
rs6694670	0.81[AMR][1000 genomes]
rs6695480	0.81[AMR][1000 genomes]
rs6701905	0.81[AMR][1000 genomes]
rs6702336	0.81[AMR][1000 genomes]
rs73092104	0.81[AMR][1000 genomes]
rs73092117	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102580	0.81[AMR][1000 genomes]
rs74139021	0.81[AMR][1000 genomes]
rs74142205	0.81[AMR][1000 genomes]
rs7514723	0.81[AMR][1000 genomes]
rs7522167	0.81[AMR][1000 genomes]
rs7532956	0.81[AMR][1000 genomes]
rs7540014	0.81[AMR][1000 genomes]
rs7545196	0.81[AMR][1000 genomes]
rs7553951	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv523114	chr1:220486349-220500958	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1006979	chr1:220488188-220501518	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv16878	chr1:220495388-220499568	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220493000-220499600	Weak transcription	Fetal Heart	heart
2	chr1:220495600-220498800	Weak transcription	GM12878-XiMat	blood

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