Variant report

Variant	rs73092774
Chromosome Location	chr2:233582863-233582864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233574220..233576643-chr2:233581660..233584341,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61750834	1.00[AMR][1000 genomes]
rs73092759	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102744	1.00[AMR][1000 genomes]
rs73106309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108323	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108335	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108362	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233564000-233589000	Weak transcription	NH-A	brain
2	chr2:233564200-233596400	Weak transcription	NHLF	lung
3	chr2:233564200-233613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:233564800-233592800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:233565000-233612200	Weak transcription	Fetal Brain Male	brain
6	chr2:233565200-233589800	Weak transcription	HMEC	breast
7	chr2:233565200-233602000	Weak transcription	HUVEC	blood vessel
8	chr2:233565200-233606400	Weak transcription	Stomach Mucosa	stomach
9	chr2:233565400-233589800	Weak transcription	Hela-S3	cervix
10	chr2:233565400-233590000	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:233565600-233641000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:233566000-233584600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:233566800-233612800	Weak transcription	Small Intestine	intestine
14	chr2:233568000-233604400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr2:233568200-233583800	Strong transcription	HepG2	liver
16	chr2:233568200-233585400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:233568400-233585000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr2:233569000-233585600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:233569200-233589000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr2:233569200-233590000	Weak transcription	NHDF-Ad	bronchial
21	chr2:233569200-233615000	Weak transcription	Colonic Mucosa	Colon
22	chr2:233569400-233612800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:233569400-233615400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr2:233570600-233593400	Weak transcription	Aorta	Aorta
25	chr2:233571200-233593600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr2:233571200-233598200	Weak transcription	Fetal Kidney	kidney
27	chr2:233571200-233627400	Weak transcription	Gastric	stomach
28	chr2:233571400-233585600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:233571400-233588600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:233571400-233601800	Weak transcription	Esophagus	oesophagus
31	chr2:233571600-233585600	Weak transcription	Right Ventricle	heart
32	chr2:233571600-233612200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:233572200-233585600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:233572200-233589000	Weak transcription	Osteobl	bone
35	chr2:233572200-233589800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr2:233572200-233589800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr2:233572200-233591600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:233572200-233593200	Weak transcription	Brain Hippocampus Middle	brain
39	chr2:233572400-233585600	Weak transcription	K562	blood
40	chr2:233572400-233585800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr2:233572400-233586800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:233573600-233589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr2:233573800-233588600	Weak transcription	Lung	lung
44	chr2:233574000-233585600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:233574200-233585800	Weak transcription	NHEK	skin
46	chr2:233574200-233588800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:233574200-233589000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr2:233574200-233589200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr2:233574400-233588200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr2:233574400-233593400	Weak transcription	H1 Cell Line	embryonic stem cell

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