Variant report

Variant	rs7309345
Chromosome Location	chr12:42298988-42298989
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10491998	1.00[ASN][1000 genomes]
rs10735999	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785314	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11181238	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1234016	0.92[CHB][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1234024	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12366401	0.97[ASN][1000 genomes]
rs1497168	0.96[ASN][1000 genomes]
rs2109531	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326861	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768384	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7309345	NFYB	trans	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42294800-42301000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:42295200-42299200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:42295800-42299800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:42297200-42301200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:42297600-42300800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:42297600-42300800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:42297800-42299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:42297800-42300000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:42298200-42299000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:42298200-42299200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:42298200-42299200	Enhancers	Fetal Brain Female	brain
12	chr12:42298200-42301200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr12:42298400-42299200	Enhancers	Brain Germinal Matrix	brain
14	chr12:42298400-42299200	Weak transcription	Fetal Brain Male	brain
15	chr12:42298400-42300200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr12:42298400-42301000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr12:42298600-42299600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr12:42298600-42301000	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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