Variant report

Variant	rs73093641
Chromosome Location	chr1:213438091-213438092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10494957	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4130132	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093643	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093646	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093650	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7518314	0.86[AMR][1000 genomes]
rs7545813	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213388200-213455400	Weak transcription	Placenta	Placenta
2	chr1:213391200-213439200	Weak transcription	Primary B cells from cord blood	blood
3	chr1:213401200-213447400	Weak transcription	Small Intestine	intestine
4	chr1:213402800-213454800	Weak transcription	Brain Substantia Nigra	brain
5	chr1:213405600-213440000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:213405600-213454800	Weak transcription	Brain Angular Gyrus	brain
7	chr1:213405800-213457600	Weak transcription	NHLF	lung
8	chr1:213406000-213450000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:213406200-213445600	Weak transcription	NHDF-Ad	bronchial
10	chr1:213406200-213454800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:213412600-213452400	Weak transcription	Right Ventricle	heart
12	chr1:213414600-213438400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:213414600-213440000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:213414800-213445400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:213414800-213445600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:213415000-213440400	Weak transcription	Ovary	ovary
17	chr1:213415200-213440200	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:213415400-213450200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:213415600-213447200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:213415600-213451000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:213415600-213453800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:213415800-213440000	Weak transcription	Aorta	Aorta
23	chr1:213415800-213440200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:213415800-213440200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr1:213416000-213440200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:213417000-213439200	Weak transcription	Primary T cells from cord blood	blood
27	chr1:213417200-213438400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr1:213417200-213440200	Weak transcription	Fetal Stomach	stomach
29	chr1:213417200-213453600	Weak transcription	HSMMtube	muscle
30	chr1:213418400-213449200	Weak transcription	Fetal Lung	lung
31	chr1:213419000-213440200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:213419800-213439800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:213422200-213440400	Weak transcription	HSMM	muscle
34	chr1:213425000-213439800	Weak transcription	Left Ventricle	heart
35	chr1:213425000-213447400	Weak transcription	Pancreas	Pancrea
36	chr1:213425200-213440000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:213425400-213444200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:213427000-213446200	Weak transcription	A549	lung
39	chr1:213427000-213451400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr1:213428000-213442000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:213430400-213440200	Weak transcription	GM12878-XiMat	blood
42	chr1:213431200-213450600	Weak transcription	Psoas Muscle	Psoas
43	chr1:213432600-213440000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr1:213432600-213440200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr1:213433800-213454800	Weak transcription	Brain Anterior Caudate	brain
46	chr1:213434400-213440400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr1:213434400-213454800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:213434400-213454800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr1:213434600-213441800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:213434600-213449200	Weak transcription	Rectal Mucosa Donor 29	rectum

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