Variant report

Variant	rs73096940
Chromosome Location	chr1:226725459-226725460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57093755	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60718314	0.90[AFR][1000 genomes]
rs60936647	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095702	0.87[AFR][1000 genomes]
rs73096942	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74141924	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555496	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832781	chr1:226570901-226750697	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226715600-226729400	Weak transcription	Lung	lung
2	chr1:226718600-226728800	Weak transcription	Psoas Muscle	Psoas
3	chr1:226718600-226729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:226721600-226725600	Weak transcription	Fetal Intestine Large	intestine
5	chr1:226723600-226729200	Weak transcription	Liver	Liver
6	chr1:226723800-226729400	Weak transcription	Fetal Heart	heart
7	chr1:226724200-226729000	Weak transcription	Left Ventricle	heart
8	chr1:226724600-226727000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:226724800-226727600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:226725200-226727600	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:226725400-226725800	Enhancers	Fetal Intestine Small	intestine
12	chr1:226725400-226725800	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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