Variant report

Variant	rs73097461
Chromosome Location	chr1:221173794-221173795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17009202	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009291	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4587571	0.92[EUR][1000 genomes]
rs57878357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58324444	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58487387	0.92[EUR][1000 genomes]
rs60162378	0.92[EUR][1000 genomes]
rs60523812	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60688199	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60884344	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6693203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73097451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73097456	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73097472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73097476	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73097478	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73097479	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7515981	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221166600-221174600	Weak transcription	Psoas Muscle	Psoas
2	chr1:221172600-221175400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:221173000-221173800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr1:221173000-221174400	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:221173000-221174400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:221173000-221174800	Enhancers	Adipose Nuclei	Adipose
7	chr1:221173000-221174800	Enhancers	Left Ventricle	heart
8	chr1:221173000-221175200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:221173200-221175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:221173400-221174000	Enhancers	Fetal Lung	lung
11	chr1:221173400-221174200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:221173400-221174600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:221173400-221175000	Enhancers	Spleen	Spleen
14	chr1:221173600-221174200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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