Variant report

Variant	rs73097462
Chromosome Location	chr1:221173826-221173827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10489958	1.00[ASN][1000 genomes]
rs17009184	1.00[ASN][1000 genomes]
rs17009190	1.00[ASN][1000 genomes]
rs17009193	1.00[ASN][1000 genomes]
rs17009209	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009253	1.00[ASN][1000 genomes]
rs17573664	1.00[ASN][1000 genomes]
rs36116663	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41353047	1.00[ASN][1000 genomes]
rs7515981	1.00[ASN][1000 genomes]
rs7536397	1.00[ASN][1000 genomes]
rs7546426	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221166600-221174600	Weak transcription	Psoas Muscle	Psoas
2	chr1:221172600-221175400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:221173000-221174400	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:221173000-221174400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:221173000-221174800	Enhancers	Adipose Nuclei	Adipose
6	chr1:221173000-221174800	Enhancers	Left Ventricle	heart
7	chr1:221173000-221175200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:221173200-221175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:221173400-221174000	Enhancers	Fetal Lung	lung
10	chr1:221173400-221174200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr1:221173400-221174600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:221173400-221175000	Enhancers	Spleen	Spleen
13	chr1:221173600-221174200	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:221173800-221174200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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