Variant report

Variant	rs73097734
Chromosome Location	chr20:25177644-25177645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:25176141..25177768-chr20:25206257..25208862,2	MCF-7	breast:
2	chr20:24972059..24974449-chr20:25176101..25177683,2	MCF-7	breast:
3	chr20:25174010..25179528-chr20:25225802..25231331,13	MCF-7	breast:
4	chr20:25174902..25179249-chr20:25225017..25231959,9	MCF-7	breast:
5	chr20:25176590..25179411-chr20:25196913..25199010,2	MCF-7	breast:
6	chr20:25173813..25179807-chr20:25203379..25207002,9	MCF-7	breast:
7	chr20:25177563..25180784-chr20:25185797..25188604,4	MCF-7	breast:
8	chr20:24971936..24974944-chr20:25175039..25178381,3	MCF-7	breast:
9	chr20:25176534..25179250-chr20:25179296..25181376,2	MCF-7	breast:
10	chr20:25177243..25179011-chr20:25246862..25248615,2	K562	blood:
11	chr20:25175542..25177840-chr20:25370513..25373072,2	MCF-7	breast:
12	chr20:25175979..25179968-chr20:25200206..25203711,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101474	Chromatin interaction
ENSG00000100994	Chromatin interaction
ENSG00000100997	Chromatin interaction
ENSG00000197586	Chromatin interaction
ENSG00000268302	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1108812	1.00[ASN][1000 genomes]
rs1555331	1.00[ASN][1000 genomes]
rs2258720	1.00[ASN][1000 genomes]
rs2474762	1.00[ASN][1000 genomes]
rs41309917	1.00[ASN][1000 genomes]
rs4815395	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1063494	chr20:25067286-25468557	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv1065101	chr20:25068046-25466542	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv544220	chr20:25068046-25466542	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv531480	chr20:25070067-25472684	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv585746	chr20:25071454-25470056	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
11	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv531481	chr20:25080583-25448944	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv949479	chr20:25096494-25467359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
14	nsv1061109	chr20:25101715-25472685	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
15	nsv544221	chr20:25101715-25472685	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
16	nsv1066667	chr20:25133066-25238976	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
17	nsv544222	chr20:25133066-25238976	Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
18	nsv3340	chr20:25160137-25190540	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	esv3388082	chr20:25175177-25177725	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25175800-25177800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr20:25175800-25177800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr20:25175800-25177800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
4	chr20:25175800-25178000	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr20:25175800-25178200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr20:25176000-25177800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr20:25176000-25177800	Active TSS	HSMM	muscle
8	chr20:25176200-25178000	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr20:25176600-25177800	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr20:25176600-25177800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr20:25176600-25178000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr20:25176600-25178000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr20:25176600-25178000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr20:25176600-25178200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr20:25176600-25178200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr20:25176600-25178200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr20:25176800-25177800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr20:25176800-25177800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr20:25176800-25177800	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr20:25176800-25177800	Flanking Active TSS	Dnd41	blood
21	chr20:25176800-25178000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr20:25176800-25178000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr20:25176800-25178000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr20:25176800-25178000	Flanking Active TSS	Fetal Thymus	thymus
25	chr20:25176800-25178000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr20:25176800-25178200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr20:25177000-25177800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr20:25177000-25177800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr20:25177000-25177800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr20:25177000-25177800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr20:25177000-25177800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr20:25177000-25177800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr20:25177000-25177800	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr20:25177000-25177800	Flanking Active TSS	Brain Substantia Nigra	brain
35	chr20:25177000-25177800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr20:25177000-25177800	Flanking Active TSS	Fetal Stomach	stomach
37	chr20:25177000-25178000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr20:25177000-25178000	Flanking Active TSS	Fetal Brain Male	brain
39	chr20:25177000-25178000	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr20:25177000-25178200	Flanking Active TSS	HMEC	breast
41	chr20:25177000-25178400	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr20:25177000-25178400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr20:25177000-25178400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr20:25177000-25178400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr20:25177000-25178400	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr20:25177000-25178400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr20:25177000-25178600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr20:25177000-25178600	Flanking Active TSS	GM12878-XiMat	blood
49	chr20:25177000-25178800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr20:25177200-25177800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell

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