Variant report

Variant	rs73099572
Chromosome Location	chr1:228921781-228921782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73097677	1.00[AMR][1000 genomes]
rs73099554	1.00[AMR][1000 genomes]
rs73099569	1.00[AMR][1000 genomes]
rs7534250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997801	chr1:228786702-228975127	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv870365	chr1:228788356-229267904	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv549299	chr1:228793246-229455876	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228918600-228928200	Weak transcription	Spleen	Spleen
2	chr1:228918800-228921800	Enhancers	Placenta	Placenta
3	chr1:228919000-228922800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:228920800-228922000	Enhancers	Fetal Thymus	thymus
5	chr1:228921000-228921800	Weak transcription	Fetal Intestine Small	intestine
6	chr1:228921000-228927000	Weak transcription	Fetal Intestine Large	intestine
7	chr1:228921200-228923400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:228921200-228923600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:228921400-228921800	Enhancers	Left Ventricle	heart
10	chr1:228921400-228922200	Enhancers	Brain Angular Gyrus	brain
11	chr1:228921400-228922400	Enhancers	Brain Substantia Nigra	brain
12	chr1:228921400-228922800	Enhancers	Brain Hippocampus Middle	brain
13	chr1:228921400-228923000	Enhancers	Brain Anterior Caudate	brain
14	chr1:228921400-228923000	Enhancers	Brain Cingulate Gyrus	brain
15	chr1:228921400-228924000	Enhancers	Psoas Muscle	Psoas
16	chr1:228921600-228923000	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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