Variant report

Variant	rs73100455
Chromosome Location	chr1:221634370-221634371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57553315	0.97[AFR][1000 genomes]
rs61136835	0.93[AFR][1000 genomes]
rs716938	0.93[AFR][1000 genomes]
rs73100439	0.92[AFR][1000 genomes]
rs73100445	0.93[AFR][1000 genomes]
rs73100447	0.93[AFR][1000 genomes]
rs73100460	0.95[AFR][1000 genomes]
rs73110035	0.97[AFR][1000 genomes]
rs73110038	0.97[AFR][1000 genomes]
rs73110054	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221615600-221635000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:221631800-221634400	Weak transcription	Psoas Muscle	Psoas
3	chr1:221632000-221635600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:221632200-221635200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:221632200-221635600	Weak transcription	Osteobl	bone
6	chr1:221632200-221636200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr1:221632600-221635400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:221632600-221635400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:221632600-221635600	Weak transcription	HSMM	muscle
10	chr1:221633200-221635200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:221633200-221636200	Weak transcription	Fetal Lung	lung
12	chr1:221633800-221634600	Enhancers	Rectal Smooth Muscle	rectum
13	chr1:221633800-221634800	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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