Variant report

Variant	rs73100603
Chromosome Location	chr3:59861812-59861813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1352021	0.91[EUR][1000 genomes]
rs17061320	0.91[EUR][1000 genomes]
rs17061328	0.91[EUR][1000 genomes]
rs55720112	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55853504	0.82[EUR][1000 genomes]
rs55903427	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55912826	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56010440	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56052110	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56145583	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56156676	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56192120	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56233685	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56242402	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56296352	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56378945	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56414037	0.83[AMR][1000 genomes]
rs620113	0.91[EUR][1000 genomes]
rs73100604	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100605	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100606	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100608	1.00[ASN][1000 genomes]
rs73100610	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100612	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100624	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100625	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100626	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100627	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100628	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100629	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100630	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100634	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100635	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73100637	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100638	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100641	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73100643	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100644	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100649	0.91[EUR][1000 genomes]
rs73100651	0.91[EUR][1000 genomes]
rs73100660	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73100663	0.91[EUR][1000 genomes]
rs73100666	0.91[EUR][1000 genomes]
rs73100668	0.91[EUR][1000 genomes]
rs73100670	0.83[AMR][1000 genomes]
rs73100680	0.83[AMR][1000 genomes]
rs73100688	0.83[AMR][1000 genomes]
rs73100697	0.83[AMR][1000 genomes]
rs73100701	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv460565	chr3:59842644-59877988	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470616	chr3:59842644-59877988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv590385	chr3:59842644-59877988	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv590386	chr3:59846067-59912377	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59850000-59864000	Weak transcription	Fetal Thymus	thymus
2	chr3:59854800-59867000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:59854800-59870800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:59855000-59865200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:59858000-59865800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:59858200-59865000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:59858600-59863000	Strong transcription	Dnd41	blood
8	chr3:59859400-59864800	Weak transcription	Thymus	Thymus
9	chr3:59859400-59865000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:59859600-59863000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:59859600-59863000	Weak transcription	NHEK	skin
12	chr3:59859600-59863200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:59859800-59862600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:59859800-59864200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:59860000-59862000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:59860200-59862200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:59861000-59862400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:59861200-59862200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:59861200-59863000	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:59861400-59864000	Weak transcription	Primary T cells from cord blood	blood
21	chr3:59861800-59862200	Enhancers	Primary B cells from cord blood	blood

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