Variant report

Variant	rs73101056
Chromosome Location	chr5:50041041-50041042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:38935799..38937565-chr5:50040178..50042178,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58695991	0.86[AFR][1000 genomes]
rs58797083	0.86[AFR][1000 genomes]
rs6450308	0.83[AFR][1000 genomes]
rs6872889	0.83[AFR][1000 genomes]
rs73099001	0.86[AFR][1000 genomes]
rs73101017	0.86[AFR][1000 genomes]
rs73101019	0.86[AFR][1000 genomes]
rs73101022	0.86[AFR][1000 genomes]
rs73101037	0.86[AFR][1000 genomes]
rs73101043	0.86[AFR][1000 genomes]
rs7710239	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016583	chr5:49455624-50116720	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023140	chr5:49455624-50121623	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv918220	chr5:49584188-50111282	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv931010	chr5:49584189-50118254	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv523212	chr5:49597497-50058043	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv2757995	chr5:49748352-50058182	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2759342	chr5:49748352-50058182	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv462159	chr5:49960673-50229851	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv598108	chr5:49960673-50229851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1030068	chr5:49986171-50047352	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv537760	chr5:49986171-50047352	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1016237	chr5:49986171-50118816	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv537761	chr5:49986171-50118816	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv1034445	chr5:49986171-50492609	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv462160	chr5:49988020-50058043	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv598109	chr5:49988020-50058043	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv598110	chr5:49988020-50089919	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv598112	chr5:49989701-50062611	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv462163	chr5:49989701-50088317	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv598113	chr5:49989701-50088317	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv598114	chr5:49991561-50088317	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv462164	chr5:50017724-50063035	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv598115	chr5:50017724-50063035	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50035000-50041200	Weak transcription	Gastric	stomach
2	chr5:50035000-50041400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:50038600-50041400	Enhancers	Fetal Thymus	thymus
4	chr5:50038800-50041800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:50039200-50041400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr5:50039200-50067200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:50039400-50042600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:50039600-50041400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:50040000-50041200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:50040000-50041200	Active TSS	Primary T cells fromperipheralblood	blood
11	chr5:50040000-50041400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr5:50040000-50041600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:50040000-50041800	Enhancers	Small Intestine	intestine
14	chr5:50040000-50069200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:50040200-50041200	Active TSS	Osteobl	bone
16	chr5:50040200-50041400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:50040200-50041400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:50040200-50041400	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr5:50040400-50041200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:50040400-50041200	Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr5:50040400-50041200	Active TSS	Right Atrium	heart
22	chr5:50040400-50041200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr5:50040400-50041200	Active TSS	NHDF-Ad	bronchial
24	chr5:50040400-50041400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr5:50040400-50041400	Active TSS	Aorta	Aorta
26	chr5:50040400-50041400	Active TSS	Stomach Smooth Muscle	stomach
27	chr5:50040400-50059600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:50040600-50041200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr5:50040600-50041200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr5:50040600-50041200	Active TSS	Brain Hippocampus Middle	brain
31	chr5:50040600-50041200	Active TSS	Psoas Muscle	Psoas
32	chr5:50040600-50041200	Active TSS	GM12878-XiMat	blood
33	chr5:50040600-50041200	Active TSS	HSMMtube	muscle
34	chr5:50040600-50041400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:50040600-50041400	Active TSS	Hela-S3	cervix
36	chr5:50040600-50041600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr5:50040600-50042000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr5:50040600-50042200	Enhancers	Fetal Brain Male	brain
39	chr5:50040800-50041200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr5:50040800-50041200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr5:50040800-50041400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr5:50040800-50041400	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr5:50040800-50041400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr5:50040800-50041600	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr5:50040800-50041600	Active TSS	NHLF	lung
46	chr5:50040800-50041800	Enhancers	Colon Smooth Muscle	Colon
47	chr5:50041000-50041200	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr5:50041000-50041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr5:50041000-50041200	Enhancers	Adipose Nuclei	Adipose
50	chr5:50041000-50041200	Weak transcription	Brain Substantia Nigra	brain

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