Variant report

Variant	rs73102335
Chromosome Location	chr20:23624264-23624265
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23618907..23621320-chr20:23623456..23625394,2	K562	blood:
2	chr20:23624045..23625707-chr20:23633322..23636030,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101439	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2145232	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2405368	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2424584	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2424585	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424586	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55656752	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55724037	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6114211	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6114215	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73102333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102352	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73102353	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73102358	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73102363	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73102364	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73102366	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73102376	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73102379	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73102381	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73102386	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs747924	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8116240	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8116249	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8122922	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8122969	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8124308	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23618600-23624800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23618600-23626000	Weak transcription	Gastric	stomach
3	chr20:23618800-23625200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr20:23618800-23626400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr20:23618800-23628600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr20:23620000-23625000	Enhancers	Fetal Thymus	thymus
7	chr20:23620800-23624400	Enhancers	Fetal Muscle Leg	muscle
8	chr20:23621200-23625200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr20:23621400-23624800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:23621400-23625000	Enhancers	Adipose Nuclei	Adipose
11	chr20:23621800-23624600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr20:23622000-23625600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:23622200-23624800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr20:23622200-23636600	Weak transcription	Pancreas	Pancrea
15	chr20:23622400-23624400	Enhancers	NHLF	lung
16	chr20:23622800-23625400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr20:23622800-23625400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr20:23622800-23640000	Weak transcription	Stomach Mucosa	stomach
19	chr20:23623000-23624400	Weak transcription	Thymus	Thymus
20	chr20:23623000-23624800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr20:23623000-23625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr20:23623000-23634200	Weak transcription	Right Atrium	heart
23	chr20:23623200-23624400	Enhancers	HepG2	liver
24	chr20:23623200-23626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr20:23623200-23636200	Weak transcription	Lung	lung
26	chr20:23623400-23625000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr20:23623400-23625400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr20:23623400-23625600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr20:23623600-23624400	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr20:23623600-23626800	Weak transcription	NHEK	skin
31	chr20:23623600-23627200	Weak transcription	HMEC	breast
32	chr20:23623800-23624800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr20:23623800-23625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr20:23623800-23626600	Weak transcription	HUVEC	blood vessel
35	chr20:23623800-23627000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr20:23624000-23624400	Enhancers	GM12878-XiMat	blood
37	chr20:23624000-23624600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr20:23624000-23624800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr20:23624200-23624800	Enhancers	Primary B cells from cord blood	blood
40	chr20:23624200-23633000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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