Variant report

Variant	rs73102772
Chromosome Location	chr1:221135099-221135100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10495158	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11799633	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17009101	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17009107	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009127	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009131	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4846674	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58419507	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679501	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73102756	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73102762	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102774	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73102783	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221131600-221135200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:221133600-221135800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:221133800-221136200	Enhancers	NHDF-Ad	bronchial
4	chr1:221133800-221137000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:221134200-221136000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:221134400-221137200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:221134600-221136000	Enhancers	K562	blood
8	chr1:221134600-221136200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:221134600-221136200	Enhancers	HSMMtube	muscle
10	chr1:221134800-221136000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:221134800-221136000	Enhancers	Liver	Liver
12	chr1:221134800-221136200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:221134800-221136200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:221134800-221136200	Enhancers	HSMM	muscle
15	chr1:221134800-221136200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:221134800-221136200	Enhancers	NH-A	brain
17	chr1:221134800-221136400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:221134800-221136400	Enhancers	NHLF	lung
19	chr1:221135000-221135400	Flanking Active TSS	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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