Variant report

Variant	rs73102916
Chromosome Location	chr5:57619442-57619443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73102945	0.93[AFR][1000 genomes]
rs7731382	1.00[AFR][1000 genomes]
rs9686647	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57616400-57620200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:57616600-57619800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:57617400-57619600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:57617600-57622800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:57618200-57619600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:57618200-57619800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:57618200-57620000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:57618600-57619800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:57618800-57626000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:57618800-57626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:57619000-57621800	Weak transcription	NHEK	skin
12	chr5:57619000-57626400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:57619400-57619800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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