Variant report

Variant	rs73103624
Chromosome Location	chr5:60582147-60582148
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:60579962..60582786-chr5:60584342..60586019,2	K562	blood:
2	chr5:60580863..60583742-chr5:60584311..60586835,2	MCF-7	breast:
3	chr5:60581805..60584600-chr5:60585174..60586685,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10044683	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070347	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10471269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10471511	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10939896	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12187377	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6869396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870703	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9291719	1.00[EUR][1000 genomes]
rs9291720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60571800-60583800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60572000-60582400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:60573400-60586600	Weak transcription	Esophagus	oesophagus
4	chr5:60573400-60594800	Weak transcription	Right Atrium	heart
5	chr5:60574000-60585400	Weak transcription	Spleen	Spleen
6	chr5:60576600-60588800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:60577000-60582400	Weak transcription	NHLF	lung
8	chr5:60577200-60582400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:60577200-60582400	Weak transcription	Pancreas	Pancrea
10	chr5:60577200-60582400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:60577200-60582400	Weak transcription	HSMM	muscle
12	chr5:60577200-60582600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr5:60577200-60585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:60577400-60584800	Weak transcription	A549	lung
15	chr5:60577800-60585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:60581200-60582400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:60581200-60586000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:60581600-60582600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr5:60581800-60583400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:60581800-60584600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr5:60581800-60585800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:60582000-60583800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:60582000-60585600	Enhancers	NHDF-Ad	bronchial

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