Variant report

Variant	rs73106087
Chromosome Location	chr20:41790284-41790285
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2000136	1.00[ASN][1000 genomes]
rs2211284	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903630	1.00[ASN][1000 genomes]
rs4812676	0.82[ASN][1000 genomes]
rs4812677	1.00[ASN][1000 genomes]
rs6030672	0.82[ASN][1000 genomes]
rs6103176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2751914	chr20:41744586-41890453	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41787000-41790600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr20:41788000-41791600	Enhancers	Fetal Stomach	stomach
3	chr20:41788200-41790600	Enhancers	Fetal Brain Male	brain
4	chr20:41788200-41791600	Enhancers	Fetal Brain Female	brain
5	chr20:41788600-41790800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr20:41789400-41791800	Enhancers	Fetal Lung	lung
7	chr20:41789400-41791800	Enhancers	Fetal Muscle Leg	muscle
8	chr20:41790000-41790400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr20:41790200-41790400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr20:41790200-41790600	Bivalent Enhancer	Adipose Nuclei	Adipose
11	chr20:41790200-41791200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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