Variant report

Variant	rs73106150
Chromosome Location	chr4:22665025-22665026
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4615162	1.00[AMR][1000 genomes]
rs59785842	0.81[AFR][1000 genomes]
rs6841197	0.81[AFR][1000 genomes]
rs73106146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106175	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3464911	chr4:22661054-22666352	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv10465	chr4:22662681-22667680	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a
5	esv3464913	chr4:22662968-22666332	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3464909	chr4:22663012-22666293	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3464912	chr4:22663017-22666252	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv3464910	chr4:22663023-22666309	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3464914	chr4:22663093-22666232	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	esv3464915	chr4:22663109-22666228	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
11	esv17363	chr4:22663167-22666182	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
12	nsv520260	chr4:22664767-22666055	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22663200-22668000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:22663200-22668600	Weak transcription	Placenta	Placenta
3	chr4:22663200-22674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:22663800-22668400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:22664000-22668200	Weak transcription	NHEK	skin
6	chr4:22665000-22665200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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