Variant report

Variant	rs73106565
Chromosome Location	chr3:59971855-59971856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10510820	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130741	0.87[ASN][1000 genomes]
rs12486471	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12489929	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12490649	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17061712	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17253376	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17254898	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17309998	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17320834	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17375293	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772466	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3772470	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772479	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55649496	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55728186	0.87[ASN][1000 genomes]
rs55815123	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56045349	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56963766	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58197240	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60347439	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73089911	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73089917	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73089929	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73104585	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73104597	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73106507	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73106547	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73106568	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv876838	chr3:59952152-59999690	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590388	chr3:59957252-60018326	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv965380	chr3:59970574-59976399	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3419324	chr3:59971462-59973660	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3340378	chr3:59971537-59974085	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59965600-59974600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:59967400-59974400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:59967400-59993000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:59968000-59986600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:59968400-59982600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:59970000-59972000	ZNF genes & repeats	Dnd41	blood
7	chr3:59970600-59972000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:59971000-59972000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:59971000-59972200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:59971400-59972000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:59971400-59972200	Enhancers	Primary B cells from cord blood	blood
12	chr3:59971400-59972200	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:59971400-59972200	Enhancers	Thymus	Thymus
14	chr3:59971600-59972000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:59971600-59972000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr3:59971600-59972000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:59971600-59972000	Enhancers	GM12878-XiMat	blood
18	chr3:59971600-59972000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr3:59971600-59972200	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr3:59971600-59972200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:59971600-59972200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:59971600-59972200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:59971600-59974200	Weak transcription	Fetal Thymus	thymus
24	chr3:59971800-59972200	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr3:59971800-59972200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr3:59971800-59972200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr3:59971800-59972200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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