Variant report

Variant	rs73107111
Chromosome Location	chr1:221247604-221247605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1335925	1.00[AMR][1000 genomes]
rs1335926	1.00[AMR][1000 genomes]
rs56293922	1.00[AMR][1000 genomes]
rs58960299	1.00[AMR][1000 genomes]
rs59851594	1.00[AMR][1000 genomes]
rs60446380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097489	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74140841	1.00[AMR][1000 genomes]
rs74140843	1.00[AMR][1000 genomes]
rs74140844	1.00[AMR][1000 genomes]
rs74141254	1.00[AMR][1000 genomes]
rs74141255	1.00[AMR][1000 genomes]
rs74141256	1.00[AMR][1000 genomes]
rs74141257	1.00[AMR][1000 genomes]
rs74141293	1.00[AMR][1000 genomes]
rs74144386	1.00[AMR][1000 genomes]
rs7550673	1.00[AMR][1000 genomes]
rs945446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221241400-221249400	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:221243600-221249400	Enhancers	Primary B cells from cord blood	blood
3	chr1:221245800-221249400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:221246800-221248000	ZNF genes & repeats	GM12878-XiMat	blood
5	chr1:221247200-221250000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:221247400-221248400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr1:221247400-221248600	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:221247400-221250000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:221247400-221250200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:221247400-221250400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:221247600-221248000	Enhancers	Adipose Nuclei	Adipose
12	chr1:221247600-221248000	Enhancers	Spleen	Spleen
13	chr1:221247600-221248400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr1:221247600-221250400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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