Variant report

Variant	rs73107315
Chromosome Location	chr7:33116765-33116766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:33115989..33118966-chr7:33124187..33126012,2	K562	blood:
2	chr7:33100318..33104291-chr7:33113620..33117724,6	MCF-7	breast:
3	chr7:33114979..33116897-chr7:33118919..33120875,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122643	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1127607	1.00[ASN][1000 genomes]
rs17473365	1.00[ASN][1000 genomes]
rs67608094	1.00[ASN][1000 genomes]
rs73093571	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73095309	1.00[ASN][1000 genomes]
rs73095315	1.00[ASN][1000 genomes]
rs73095326	1.00[ASN][1000 genomes]
rs73095361	1.00[ASN][1000 genomes]
rs73095378	1.00[ASN][1000 genomes]
rs73103770	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73105656	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73107303	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	esv3478254	chr7:32956181-33133477	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3478255	chr7:32956181-33133477	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3528603	chr7:32956254-33133429	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3528604	chr7:32956254-33133429	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	esv3366191	chr7:32956659-33134592	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	esv3418466	chr7:32968130-33138898	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33113000-33119200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:33115000-33119200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:33115600-33116800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:33115800-33117600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:33115800-33117600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:33115800-33118000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:33115800-33148000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:33116000-33117600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:33116000-33117600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:33116200-33117000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:33116200-33117000	Enhancers	Primary B cells from peripheral blood	blood
12	chr7:33116200-33117400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr7:33116200-33117600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:33116200-33117600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:33116200-33117600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:33116200-33117600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:33116200-33117600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr7:33116200-33119400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:33116400-33116800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:33116400-33116800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:33116400-33116800	Enhancers	Fetal Thymus	thymus
22	chr7:33116400-33117000	Enhancers	Primary hematopoietic stem cells	blood
23	chr7:33116400-33117200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:33116400-33117200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr7:33116400-33117600	Enhancers	Primary T cells from cord blood	blood
26	chr7:33116400-33117600	Enhancers	Primary T cells fromperipheralblood	blood
27	chr7:33116400-33117600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr7:33116400-33117600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr7:33116400-33119200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr7:33116400-33119400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:33116600-33119200	Weak transcription	H1 Cell Line	embryonic stem cell

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