Variant report

Variant	rs73109137
Chromosome Location	chr4:26457716-26457717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73810216	1.00[AMR][1000 genomes]
rs73810925	1.00[AMR][1000 genomes]
rs7659207	1.00[AMR][1000 genomes]
rs9291484	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878767	chr4:26451326-26463490	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv10468	chr4:26453879-26462957	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2757048	chr4:26456267-26461885	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2759237	chr4:26456267-26461885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
2	chr4:26445000-26461000	Weak transcription	HSMM	muscle
3	chr4:26453200-26459600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:26454200-26458000	Weak transcription	Fetal Stomach	stomach
5	chr4:26454400-26459000	Weak transcription	Fetal Lung	lung
6	chr4:26454800-26460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:26455200-26458600	Weak transcription	Primary T cells from cord blood	blood
8	chr4:26456200-26459800	Weak transcription	HSMMtube	muscle
9	chr4:26457400-26461200	Enhancers	Colon Smooth Muscle	Colon
10	chr4:26457600-26458600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:26457600-26459000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:26457600-26459200	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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