Variant report

Variant	rs73109179
Chromosome Location	chr3:79190534-79190535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1869801	0.94[EUR][1000 genomes]
rs324755	0.88[EUR][1000 genomes]
rs324756	0.88[EUR][1000 genomes]
rs4533610	0.94[EUR][1000 genomes]
rs9809987	0.88[EUR][1000 genomes]
rs9815951	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834745	chr3:79055426-79227937	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79188400-79190600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:79188400-79190600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:79188400-79190600	Enhancers	Osteobl	bone
4	chr3:79188400-79190800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:79188800-79190800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:79188800-79190800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:79189800-79190600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:79189800-79190800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:79190200-79190600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:79190200-79190800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:79190200-79190800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:79190200-79190800	Enhancers	Fetal Brain Male	brain
13	chr3:79190400-79190600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:79190400-79190800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:79190400-79190800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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