Variant report

Variant	rs73109813
Chromosome Location	chr5:61189225-61189226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs73107945	0.85[AMR][1000 genomes]
rs73107947	0.85[AMR][1000 genomes]
rs73107973	0.85[AMR][1000 genomes]
rs73109805	0.85[AMR][1000 genomes]
rs73109807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109808	0.85[AMR][1000 genomes]
rs73109809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719815	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881723	chr5:61183375-61311715	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61183400-61190600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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