Variant report

Variant	rs73115879
Chromosome Location	chr12:41978416-41978417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10506198	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1495778	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17121156	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17129547	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2007974	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3747556	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4265646	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73115867	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73115875	0.97[EUR][1000 genomes]
rs73115897	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41977000-41981200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41978200-41979200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:41978200-41979200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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