Variant report

Variant	rs73116187
Chromosome Location	chr12:64709878-64709879
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64709338..64711273-chr12:64798098..64800969,2	K562	blood:
2	chr12:64707395..64710674-chr12:64712585..64715820,4	MCF-7	breast:
3	chr12:64706665..64709989-chr12:64796650..64799305,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184575	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1002392	0.85[ASN][1000 genomes]
rs10735919	0.82[ASN][1000 genomes]
rs10748005	0.85[ASN][1000 genomes]
rs10748006	0.84[ASN][1000 genomes]
rs10784389	0.81[ASN][1000 genomes]
rs10784390	0.82[ASN][1000 genomes]
rs10784392	0.84[ASN][1000 genomes]
rs10784394	0.86[ASN][1000 genomes]
rs10784397	0.86[ASN][1000 genomes]
rs10784398	0.86[ASN][1000 genomes]
rs10784400	0.82[ASN][1000 genomes]
rs10878128	0.82[ASN][1000 genomes]
rs10878129	0.84[ASN][1000 genomes]
rs10878130	0.84[ASN][1000 genomes]
rs10878131	0.85[ASN][1000 genomes]
rs10878132	0.85[ASN][1000 genomes]
rs10878134	0.86[ASN][1000 genomes]
rs10878135	0.86[ASN][1000 genomes]
rs10878140	0.91[ASN][1000 genomes]
rs10878141	0.91[ASN][1000 genomes]
rs10878142	0.91[ASN][1000 genomes]
rs11175302	0.82[ASN][1000 genomes]
rs11175307	0.85[ASN][1000 genomes]
rs11175308	0.85[ASN][1000 genomes]
rs1162974	0.81[ASN][1000 genomes]
rs1162976	0.82[ASN][1000 genomes]
rs1162977	0.82[ASN][1000 genomes]
rs1178702	0.82[ASN][1000 genomes]
rs1178703	0.82[ASN][1000 genomes]
rs12297747	0.85[ASN][1000 genomes]
rs12298172	0.82[ASN][1000 genomes]
rs12300514	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12300747	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12303938	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12309193	0.81[ASN][1000 genomes]
rs12317146	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12321083	0.81[ASN][1000 genomes]
rs12581905	0.86[ASN][1000 genomes]
rs1347576	0.88[ASN][1000 genomes]
rs1436362	0.91[ASN][1000 genomes]
rs1436363	0.90[ASN][1000 genomes]
rs1545098	0.86[ASN][1000 genomes]
rs17223130	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17223151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1808129	0.82[ASN][1000 genomes]
rs1865791	0.82[ASN][1000 genomes]
rs1865797	0.83[ASN][1000 genomes]
rs1865798	0.83[ASN][1000 genomes]
rs1898220	0.82[ASN][1000 genomes]
rs1978794	0.82[ASN][1000 genomes]
rs2010889	0.85[ASN][1000 genomes]
rs2010893	0.85[ASN][1000 genomes]
rs2082950	0.89[ASN][1000 genomes]
rs2164503	0.86[ASN][1000 genomes]
rs2334885	0.80[ASN][1000 genomes]
rs2878281	0.85[ASN][1000 genomes]
rs4076831	0.86[ASN][1000 genomes]
rs4631982	0.82[ASN][1000 genomes]
rs4763009	0.82[ASN][1000 genomes]
rs4763010	0.82[ASN][1000 genomes]
rs4763143	0.82[ASN][1000 genomes]
rs4763144	0.82[ASN][1000 genomes]
rs4763145	0.85[ASN][1000 genomes]
rs4763146	0.85[ASN][1000 genomes]
rs4763147	0.85[ASN][1000 genomes]
rs4763148	0.85[ASN][1000 genomes]
rs4763149	0.85[ASN][1000 genomes]
rs4763150	0.85[ASN][1000 genomes]
rs5015816	0.82[ASN][1000 genomes]
rs5015817	0.85[ASN][1000 genomes]
rs5015818	0.85[ASN][1000 genomes]
rs56160145	0.83[ASN][1000 genomes]
rs59282249	0.81[ASN][1000 genomes]
rs61034000	0.81[ASN][1000 genomes]
rs61931479	0.88[ASN][1000 genomes]
rs6581534	0.85[ASN][1000 genomes]
rs7303208	0.86[ASN][1000 genomes]
rs7306905	0.86[ASN][1000 genomes]
rs7313249	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7313429	0.82[ASN][1000 genomes]
rs7316630	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7487859	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7954838	0.86[ASN][1000 genomes]
rs7955726	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7956726	0.81[ASN][1000 genomes]
rs7962466	0.86[ASN][1000 genomes]
rs7964830	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7969382	0.88[ASN][1000 genomes]
rs7971787	0.85[ASN][1000 genomes]
rs7973109	0.88[ASN][1000 genomes]
rs7976659	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64698600-64710000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:64698600-64714000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:64706200-64713800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:64706600-64712000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links