Variant report

Variant	rs73116411
Chromosome Location	chr4:15855257-15855258
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16892757	1.00[AMR][1000 genomes]
rs73116412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878714	chr4:15840839-15895791	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15835000-15857400	Weak transcription	Psoas Muscle	Psoas
2	chr4:15840400-15855400	Weak transcription	Liver	Liver
3	chr4:15842600-15856600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr4:15849400-15855600	Strong transcription	Fetal Thymus	thymus
5	chr4:15849400-15855800	Strong transcription	Thymus	Thymus
6	chr4:15850800-15863200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:15852000-15855400	Strong transcription	Primary B cells from cord blood	blood
8	chr4:15852800-15855400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:15853800-15857000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:15853800-15863200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:15854000-15855600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:15854000-15864400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:15854000-15868800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:15855200-15856800	Weak transcription	Dnd41	blood
15	chr4:15855200-15858200	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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