Variant report

Variant	rs73116828
Chromosome Location	chr5:68781613-68781614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28469160	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28652974	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28666036	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61705994	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73116892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116901	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018410	chr5:68692244-68822384	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1023116	chr5:68744307-68867282	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034024	chr5:68760271-69118123	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68779800-68782600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:68780000-68784000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:68780600-68781800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:68780600-68781800	Enhancers	HUVEC	blood vessel
5	chr5:68780600-68782000	Enhancers	HepG2	liver
6	chr5:68780800-68782000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:68781200-68781800	Enhancers	Fetal Intestine Small	intestine
8	chr5:68781200-68781800	Enhancers	Fetal Kidney	kidney
9	chr5:68781200-68782400	Enhancers	GM12878-XiMat	blood
10	chr5:68781200-68787600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:68781400-68781800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:68781600-68785000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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