The 2.0 version of rSNPBase

Variant report

Variant rs73117392
Chromosome Location chr3:70002020-70002021
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:69964400-70008400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr3:69975200-70008400 Weak transcription Rectal Smooth Muscle rectum
3 chr3:69975800-70008400 Weak transcription Aorta Aorta
4 chr3:69975800-70013800 Weak transcription Psoas Muscle Psoas
5 chr3:69978600-70014000 Weak transcription Esophagus oesophagus
6 chr3:69979800-70008400 Weak transcription Right Ventricle heart
7 chr3:69981800-70008200 Weak transcription Stomach Mucosa stomach
8 chr3:69981800-70016800 Weak transcription K562 blood
9 chr3:69983400-70008400 Weak transcription Fetal Muscle Leg muscle
10 chr3:69984000-70008600 Weak transcription Fetal Kidney kidney
11 chr3:69985400-70007000 Weak transcription Fetal Stomach stomach
12 chr3:69985600-70008400 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr3:69987200-70008400 Weak transcription Lung lung
14 chr3:69987600-70008400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr3:69987800-70008400 Weak transcription Gastric stomach
16 chr3:69987800-70008400 Weak transcription Pancreas Pancrea
17 chr3:69988400-70008800 Weak transcription Fetal Lung lung
18 chr3:69990800-70015600 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr3:69991200-70008600 Weak transcription NHLF lung
20 chr3:69993600-70015600 Weak transcription Colonic Mucosa Colon
21 chr3:69994400-70016200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr3:69996200-70008400 Weak transcription HSMMtube muscle
23 chr3:69997400-70002200 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr3:69998000-70007200 Weak transcription Fetal Heart heart
25 chr3:69998000-70008400 Weak transcription Brain Inferior Temporal Lobe brain
26 chr3:69998000-70008600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr3:69998000-70008600 Weak transcription Brain Angular Gyrus brain
28 chr3:69998000-70008600 Weak transcription Brain Anterior Caudate brain
29 chr3:69998000-70008600 Weak transcription Brain Cingulate Gyrus brain
30 chr3:69998000-70008600 Weak transcription Brain Substantia Nigra brain
31 chr3:69998000-70016000 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr3:69998200-70017600 Weak transcription Duodenum Mucosa Duodenum
33 chr3:69998400-70011200 Weak transcription Brain Hippocampus Middle brain
34 chr3:69998400-70016000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr3:69998800-70003400 Weak transcription Ovary ovary
36 chr3:69998800-70014200 Weak transcription A549 lung
37 chr3:69999000-70006200 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr3:69999400-70003200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr3:69999400-70007400 Weak transcription Stomach Smooth Muscle stomach
40 chr3:69999400-70008600 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr3:70000600-70007400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr3:70000600-70008400 Weak transcription Left Ventricle heart
43 chr3:70001000-70005400 Weak transcription Adipose Nuclei Adipose
44 chr3:70001200-70003000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr3:70001200-70006800 Weak transcription Monocytes-CD14+_RO01746 blood
46 chr3:70001200-70007600 Weak transcription Primary monocytes fromperipheralblood blood
47 chr3:70001600-70017200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
48 chr3:70001800-70002600 Strong transcription Colon Smooth Muscle Colon
49 chr3:70001800-70008400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr3:70002000-70002200 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015