Variant report
| Variant | rs73118098 |
|---|---|
| Chromosome Location | chr20:40870220-40870221 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:40857397..40860035-chr20:40866668..40870281,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs41278134 | 1.00[AFR][1000 genomes] |
| rs41278136 | 1.00[AFR][1000 genomes] |
| rs41278142 | 1.00[AFR][1000 genomes] |
| rs45500198 | 1.00[AFR][1000 genomes] |
| rs73114432 | 1.00[AFR][1000 genomes] |
| rs73117860 | 1.00[AFR][1000 genomes] |
| rs73117872 | 1.00[AFR][1000 genomes] |
| rs73117886 | 1.00[AFR][1000 genomes] |
| rs73119803 | 1.00[AFR][1000 genomes] |
| rs73119815 | 1.00[AFR][1000 genomes] |
| rs73119820 | 1.00[AFR][1000 genomes] |
| rs73119823 | 1.00[AFR][1000 genomes] |
| rs73119845 | 1.00[AFR][1000 genomes] |
| rs73119847 | 1.00[AFR][1000 genomes] |
| rs73119850 | 1.00[AFR][1000 genomes] |
| rs73120035 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs73129112 | 1.00[AFR][1000 genomes] |
| rs73129138 | 1.00[AFR][1000 genomes] |
| rs73129147 | 1.00[AFR][1000 genomes] |
| rs73129170 | 1.00[AFR][1000 genomes] |
| rs73129176 | 1.00[AFR][1000 genomes] |
| rs73129180 | 1.00[AFR][1000 genomes] |
| rs73131104 | 1.00[AFR][1000 genomes] |
| rs73131109 | 1.00[AFR][1000 genomes] |
| rs73131116 | 1.00[AFR][1000 genomes] |
| rs73131124 | 1.00[AFR][1000 genomes] |
| rs73131125 | 1.00[AFR][1000 genomes] |
| rs73254777 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751913 | chr20:40422982-41269321 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv532516 | chr20:40451059-41097155 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:40861800-40874600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
