Variant report

Variant	rs73118459
Chromosome Location	chr4:15907810-15907811
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15884002..15884928-chr4:15907513..15908195,2	MCF-7	breast:
2	chr4:15884741..15886965-chr4:15906601..15909552,2	MCF-7	breast:
3	chr4:15894317..15897276-chr4:15906145..15908505,2	MCF-7	breast:
4	chr4:15907463..15908036-chr4:15957691..15958387,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2098055	0.95[EUR][1000 genomes]
rs2531151	1.00[EUR][1000 genomes]
rs2532068	0.95[EUR][1000 genomes]
rs73116477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116488	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73116493	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118457	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118460	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118463	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73118466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15906600-15909200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:15907000-15908000	Bivalent Enhancer	Fetal Stomach	stomach
3	chr4:15907000-15908400	Enhancers	Stomach Mucosa	stomach
4	chr4:15907000-15909000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:15907200-15908200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr4:15907200-15908200	Enhancers	Colonic Mucosa	Colon
7	chr4:15907200-15908200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:15907200-15908400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr4:15907200-15908400	Flanking Active TSS	A549	lung
10	chr4:15907200-15908600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:15907400-15908000	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr4:15907400-15908000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:15907400-15908000	Active TSS	Duodenum Mucosa	Duodenum
14	chr4:15907400-15908200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:15907400-15908400	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr4:15907400-15908600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:15907400-15909000	Enhancers	HMEC	breast
18	chr4:15907600-15908000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:15907600-15908000	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr4:15907600-15908000	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr4:15907600-15908000	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr4:15907600-15908000	Active TSS	Hela-S3	cervix
23	chr4:15907600-15908000	Enhancers	NHEK	skin
24	chr4:15907600-15908200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:15907800-15908000	Flanking Active TSS	Placenta	Placenta
26	chr4:15907800-15908200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
27	chr4:15907800-15908200	Active TSS	H9 Cell Line	embryonic stem cell
28	chr4:15907800-15908200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr4:15907800-15908200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:15907800-15908200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr4:15907800-15908200	Enhancers	K562	blood
32	chr4:15907800-15908600	Enhancers	Liver	Liver
33	chr4:15907800-15909000	Enhancers	Stomach Smooth Muscle	stomach

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