Variant report

Variant	rs73120660
Chromosome Location	chr3:79018062-79018063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73116718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79001000-79024200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:79006800-79023600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:79007000-79023400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:79007200-79019400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:79011400-79027400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:79013400-79018400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:79013400-79021800	Weak transcription	Psoas Muscle	Psoas
8	chr3:79015400-79018200	Enhancers	Brain Angular Gyrus	brain
9	chr3:79015400-79022200	Weak transcription	Ovary	ovary
10	chr3:79016400-79022000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:79016600-79018400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:79016800-79018400	Weak transcription	HMEC	breast
13	chr3:79016800-79023600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:79016800-79024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:79017400-79018800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:79017800-79018600	Enhancers	Brain Hippocampus Middle	brain
17	chr3:79017800-79018600	Enhancers	Brain Substantia Nigra	brain
18	chr3:79018000-79018400	Enhancers	Brain Anterior Caudate	brain
19	chr3:79018000-79027600	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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