Variant report

Variant	rs73120661
Chromosome Location	chr3:79018455-79018456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73115188	1.00[AMR][1000 genomes]
rs73116707	1.00[AMR][1000 genomes]
rs73120620	1.00[AMR][1000 genomes]
rs73120664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120668	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79001000-79024200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:79006800-79023600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:79007000-79023400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:79007200-79019400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:79011400-79027400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:79013400-79021800	Weak transcription	Psoas Muscle	Psoas
7	chr3:79015400-79022200	Weak transcription	Ovary	ovary
8	chr3:79016400-79022000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:79016800-79023600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:79016800-79024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:79017400-79018800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr3:79017800-79018600	Enhancers	Brain Hippocampus Middle	brain
13	chr3:79017800-79018600	Enhancers	Brain Substantia Nigra	brain
14	chr3:79018000-79027600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:79018200-79019200	Enhancers	HSMM	muscle
16	chr3:79018200-79019600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:79018200-79027600	Weak transcription	Brain Angular Gyrus	brain
18	chr3:79018400-79018600	Enhancers	Fetal Lung	lung
19	chr3:79018400-79018800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:79018400-79018800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:79018400-79018800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:79018400-79018800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:79018400-79018800	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr3:79018400-79018800	Enhancers	NHDF-Ad	bronchial
25	chr3:79018400-79019000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:79018400-79019000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr3:79018400-79019000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr3:79018400-79019000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:79018400-79019000	Enhancers	HMEC	breast
30	chr3:79018400-79019600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:79018400-79020200	Enhancers	Osteobl	bone

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