Variant report

Variant	rs73121253
Chromosome Location	chr2:235121858-235121859
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16850620	0.97[ASN][1000 genomes]
rs16850622	0.97[ASN][1000 genomes]
rs56143539	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57061398	1.00[EUR][1000 genomes]
rs57330464	0.98[ASN][1000 genomes]
rs59548955	0.85[AMR][1000 genomes]
rs60905338	0.98[ASN][1000 genomes]
rs61490499	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6742442	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6755661	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121227	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121231	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121234	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121235	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121237	1.00[AMR][1000 genomes]
rs73999245	0.83[AMR][1000 genomes]
rs73999271	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv584713	chr2:235092011-235236611	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235113800-235125800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:235114000-235125800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:235119600-235122400	Enhancers	Dnd41	blood
4	chr2:235120800-235122000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:235120800-235122200	Enhancers	Pancreas	Pancrea
6	chr2:235121000-235122000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:235121400-235123600	Weak transcription	Right Atrium	heart
8	chr2:235121600-235123600	Weak transcription	Spleen	Spleen
9	chr2:235121800-235126800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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