Variant report
| Variant | rs7312154 |
|---|---|
| Chromosome Location | chr12:40836909-40836910 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 12:40793507-40812339..12:40836437-40839614 | H1-hESC | embryonic stem cell: | embryo |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MUC19-1 | chr12:40836878-40836982 | NONHSAT027728 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000205592 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11564141 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs11564176 | 1.00[CEU][hapmap] |
| rs12298792 | 1.00[AMR][1000 genomes] |
| rs12306309 | 0.94[AFR][1000 genomes] |
| rs17444299 | 1.00[CHB][hapmap] |
| rs17519916 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs17521019 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs74079640 | 1.00[AMR][1000 genomes] |
| rs74079642 | 1.00[AMR][1000 genomes] |
| rs9805051 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832377 | chr12:40704881-40855223 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039272 | chr12:40817585-40841318 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
