Variant report

Variant	rs73121558
Chromosome Location	chr12:60335608-60335609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12578393	1.00[EUR][1000 genomes]
rs3912930	1.00[EUR][1000 genomes]
rs4129725	1.00[EUR][1000 genomes]
rs55731614	1.00[EUR][1000 genomes]
rs55810530	1.00[EUR][1000 genomes]
rs56150658	1.00[EUR][1000 genomes]
rs56370880	1.00[EUR][1000 genomes]
rs60131526	1.00[EUR][1000 genomes]
rs73106125	1.00[EUR][1000 genomes]
rs73106200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73108215	1.00[EUR][1000 genomes]
rs73108242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121594	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2751107	chr12:60252000-60353533	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv826393	chr12:60293625-60359283	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60333600-60336200	Enhancers	Fetal Intestine Small	intestine
2	chr12:60334400-60335800	Enhancers	Duodenum Mucosa	Duodenum
3	chr12:60334600-60336400	Enhancers	Fetal Heart	heart
4	chr12:60335200-60336000	Enhancers	Fetal Intestine Large	intestine
5	chr12:60335400-60336000	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links