Variant report

Variant	rs73122849
Chromosome Location	chr1:222755266-222755267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:222751301..222753492-chr1:222754246..222756592,3	K562	blood:
2	chr1:222740610..222743248-chr1:222753754..222755473,2	K562	blood:
3	chr1:222750081..222757071-chr1:222758123..222764755,12	K562	blood:
4	chr1:222753738..222756100-chr1:222759051..222761719,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143498	Chromatin interaction
ENSG00000225265	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1024065	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10495194	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17463740	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17464857	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511318	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909194	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982983	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2006790	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2936030	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2936039	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2936041	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2936044	0.85[EUR][1000 genomes]
rs2936045	0.85[EUR][1000 genomes]
rs2936046	0.85[EUR][1000 genomes]
rs3002130	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008645	0.91[EUR][1000 genomes]
rs3008647	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3008653	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3008654	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008655	0.84[EUR][1000 genomes]
rs35750438	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4328077	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122816	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122823	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122834	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122850	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122857	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74145503	0.92[AMR][1000 genomes]
rs74148133	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74148140	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74148142	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9441828	0.88[EUR][1000 genomes]
rs9441911	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873203	chr1:222332906-222775000	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv873205	chr1:222718718-222923351	Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv1842070	chr1:222732027-222763235	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222720800-222757400	Weak transcription	HSMMtube	muscle
2	chr1:222721200-222762200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:222721800-222762400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:222722000-222755600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:222722000-222755800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:222725600-222762200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr1:222727600-222762600	Weak transcription	Aorta	Aorta
8	chr1:222727800-222762400	Weak transcription	Thymus	Thymus
9	chr1:222728200-222762200	Weak transcription	Small Intestine	intestine
10	chr1:222729600-222762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:222729800-222758800	Weak transcription	Pancreas	Pancrea
12	chr1:222730800-222760200	Weak transcription	Brain Substantia Nigra	brain
13	chr1:222730800-222761200	Weak transcription	Fetal Brain Male	brain
14	chr1:222731200-222762400	Weak transcription	Spleen	Spleen
15	chr1:222731600-222756200	Weak transcription	Esophagus	oesophagus
16	chr1:222731600-222758800	Weak transcription	Gastric	stomach
17	chr1:222731600-222762200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:222733600-222762400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:222733800-222761800	Weak transcription	Brain Angular Gyrus	brain
20	chr1:222733800-222762200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:222734000-222762400	Weak transcription	Right Ventricle	heart
22	chr1:222734200-222762400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:222734800-222762200	Weak transcription	Colonic Mucosa	Colon
24	chr1:222739000-222761600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:222742200-222762400	Weak transcription	Fetal Kidney	kidney
26	chr1:222742600-222755800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:222742800-222755600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr1:222742800-222755600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr1:222742800-222759600	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:222742800-222760200	Weak transcription	Psoas Muscle	Psoas
31	chr1:222742800-222762200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr1:222743000-222762400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr1:222743200-222755600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr1:222743200-222755800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:222743400-222759400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:222743400-222761600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr1:222743600-222755600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr1:222743600-222755800	Weak transcription	NHLF	lung
39	chr1:222743600-222762200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr1:222743800-222755800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:222744400-222755400	Weak transcription	Osteobl	bone
42	chr1:222744600-222759600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr1:222745000-222755400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr1:222745000-222758200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr1:222745200-222759600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr1:222745800-222755400	Weak transcription	Hela-S3	cervix
47	chr1:222745800-222762200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr1:222746000-222762600	Weak transcription	Lung	lung
49	chr1:222746200-222755600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:222746600-222756200	Weak transcription	Fetal Intestine Small	intestine

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