Variant report

Variant	rs73129644
Chromosome Location	chr5:76056036-76056037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60241604	0.86[AFR][1000 genomes]
rs61318646	1.00[AMR][1000 genomes]
rs73129603	1.00[AMR][1000 genomes]
rs73129624	1.00[AMR][1000 genomes]
rs73129631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73129650	0.82[AFR][1000 genomes]
rs73131648	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76051000-76056600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr5:76052400-76056600	Weak transcription	K562	blood
3	chr5:76054200-76056200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:76054400-76056200	Enhancers	HMEC	breast
5	chr5:76054400-76057800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:76054400-76059600	Enhancers	NHEK	skin
7	chr5:76055000-76059000	Weak transcription	HepG2	liver
8	chr5:76055400-76056200	Enhancers	Placenta	Placenta
9	chr5:76055400-76058400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:76055600-76056200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:76056000-76056200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:76056000-76056200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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