Variant report

Variant	rs73129671
Chromosome Location	chr5:76069537-76069538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60778250	1.00[AFR][1000 genomes]
rs73129662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73129672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73131642	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv965590	chr5:76061083-76081416	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv462213	chr5:76067624-76112869	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv598682	chr5:76067624-76112869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76060600-76070200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr5:76061600-76074800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:76068200-76070200	Weak transcription	Osteobl	bone
4	chr5:76068200-76070400	Weak transcription	HepG2	liver
5	chr5:76068200-76070800	Weak transcription	NH-A	brain
6	chr5:76068400-76070200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:76068400-76070200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:76068400-76070400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:76068600-76069600	Weak transcription	HSMMtube	muscle
10	chr5:76068600-76074600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr5:76068800-76074400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr5:76069000-76070400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:76069400-76070200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:76069400-76072400	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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