Variant report

Variant	rs73130366
Chromosome Location	chr3:85585036-85585037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10511075	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11127899	0.82[AFR][1000 genomes]
rs11127900	0.82[AFR][1000 genomes]
rs1449378	0.81[AFR][1000 genomes]
rs1449379	0.81[AFR][1000 genomes]
rs1449380	0.81[AFR][1000 genomes]
rs1449381	0.81[AFR][1000 genomes]
rs1449382	0.81[AFR][1000 genomes]
rs1463205	0.81[AFR][1000 genomes]
rs1463206	0.81[AFR][1000 genomes]
rs1463207	0.81[AFR][1000 genomes]
rs1463208	0.81[AFR][1000 genomes]
rs1470636	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1530738	0.81[AFR][1000 genomes]
rs1530739	0.81[AFR][1000 genomes]
rs1530740	0.81[AFR][1000 genomes]
rs1551045	0.82[AFR][1000 genomes]
rs1551046	0.82[AFR][1000 genomes]
rs1551047	0.81[AFR][1000 genomes]
rs1551048	0.81[AFR][1000 genomes]
rs17457050	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17457189	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17457217	0.90[AFR][1000 genomes]
rs17457377	0.90[AFR][1000 genomes]
rs17457426	0.90[AFR][1000 genomes]
rs17457454	0.90[AFR][1000 genomes]
rs17457642	0.82[AFR][1000 genomes]
rs17457669	0.82[AFR][1000 genomes]
rs17459563	0.81[AFR][1000 genomes]
rs17516470	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17516504	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17516546	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17516580	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17516683	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17516857	0.90[AFR][1000 genomes]
rs17517080	0.87[AFR][1000 genomes]
rs17517142	0.82[AFR][1000 genomes]
rs17517238	0.82[AFR][1000 genomes]
rs17517273	0.82[AFR][1000 genomes]
rs17519241	0.81[AFR][1000 genomes]
rs17519262	0.81[AFR][1000 genomes]
rs1900914	0.81[AFR][1000 genomes]
rs1900918	0.82[AFR][1000 genomes]
rs2122233	0.81[AFR][1000 genomes]
rs2122234	0.82[AFR][1000 genomes]
rs2122235	0.90[AFR][1000 genomes]
rs2167043	0.81[AFR][1000 genomes]
rs2167044	0.81[AFR][1000 genomes]
rs2167045	0.81[AFR][1000 genomes]
rs2167046	0.90[AFR][1000 genomes]
rs2167047	0.90[AFR][1000 genomes]
rs34305569	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34467301	0.88[AFR][1000 genomes]
rs35438712	0.90[AFR][1000 genomes]
rs4502590	0.81[AFR][1000 genomes]
rs4603966	0.81[AFR][1000 genomes]
rs4856271	0.87[AFR][1000 genomes]
rs4856588	0.81[AFR][1000 genomes]
rs4856590	0.81[AFR][1000 genomes]
rs55801641	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs56779213	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57756567	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58796643	0.84[AFR][1000 genomes]
rs58919842	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59073108	0.81[AFR][1000 genomes]
rs59491876	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59770976	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60597959	0.83[AFR][1000 genomes]
rs61586601	0.85[AFR][1000 genomes]
rs62250467	0.81[AFR][1000 genomes]
rs62250468	0.81[AFR][1000 genomes]
rs62252512	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62252513	0.90[AFR][1000 genomes]
rs62252516	0.90[AFR][1000 genomes]
rs62252518	0.90[AFR][1000 genomes]
rs62252519	0.90[AFR][1000 genomes]
rs62253961	0.81[AFR][1000 genomes]
rs62253964	0.81[AFR][1000 genomes]
rs62253965	0.81[AFR][1000 genomes]
rs66625173	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66781790	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs66922686	0.82[AFR][1000 genomes]
rs67544605	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6765991	0.81[AFR][1000 genomes]
rs6766493	0.90[AFR][1000 genomes]
rs6777456	0.82[AFR][1000 genomes]
rs6777458	0.82[AFR][1000 genomes]
rs6779501	0.90[AFR][1000 genomes]
rs6780346	0.82[AFR][1000 genomes]
rs6790090	0.82[AFR][1000 genomes]
rs6804626	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72615727	0.81[AFR][1000 genomes]
rs7620313	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1002139	chr3:85534559-85630146	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1006433	chr3:85535783-85631667	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv590906	chr3:85539816-85626054	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1008269	chr3:85544536-85617198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv536627	chr3:85544536-85617198	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv527642	chr3:85551353-85619451	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1007503	chr3:85558527-85617198	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1013950	chr3:85561009-85631527	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv536628	chr3:85561009-85631527	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1006141	chr3:85577197-85619079	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85583000-85585400	Enhancers	Fetal Brain Male	brain
2	chr3:85583800-85585200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:85584400-85585200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:85584400-85585400	Enhancers	Brain Substantia Nigra	brain
5	chr3:85584600-85585200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:85584600-85585200	Enhancers	Brain Angular Gyrus	brain
7	chr3:85584600-85585200	Enhancers	Brain Hippocampus Middle	brain
8	chr3:85584600-85585200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:85584800-85585200	Enhancers	Brain Germinal Matrix	brain
10	chr3:85584800-85587400	Weak transcription	Brain Anterior Caudate	brain
11	chr3:85585000-85588000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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