Variant report

Variant	rs73132443
Chromosome Location	chr5:75680745-75680746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75670460..75672196-chr5:75679866..75681597,2	MCF-7	breast:
2	chr5:75679957..75682870-chr5:75683054..75686603,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16873342	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58211357	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7731480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75669000-75682400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:75675400-75685800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:75676800-75681600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:75676800-75681800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:75677000-75681800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:75677000-75684000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:75677000-75684800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:75677000-75684800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:75677200-75682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:75677400-75689000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:75677600-75681400	Weak transcription	Placenta	Placenta
12	chr5:75677600-75681600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr5:75677800-75691200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:75678000-75681600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:75678200-75681200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:75678200-75681600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:75678400-75681400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:75678800-75681400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:75678800-75686600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:75679000-75681000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:75679000-75681000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:75679000-75681200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr5:75679000-75681200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr5:75679000-75681400	Enhancers	Primary T cells from cord blood	blood
25	chr5:75679000-75681400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:75679000-75681600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr5:75679200-75681800	Enhancers	Primary hematopoietic stem cells	blood
28	chr5:75679400-75680800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:75679800-75680800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:75679800-75681000	Enhancers	Gastric	stomach
31	chr5:75679800-75682800	Enhancers	Stomach Mucosa	stomach
32	chr5:75679800-75683200	Enhancers	Fetal Thymus	thymus
33	chr5:75679800-75684200	Enhancers	Pancreas	Pancrea
34	chr5:75679800-75685200	Enhancers	Liver	Liver
35	chr5:75680000-75681200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr5:75680000-75681400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr5:75680000-75685000	Weak transcription	Fetal Brain Female	brain
38	chr5:75680200-75682200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr5:75680400-75681200	Enhancers	Thymus	Thymus
40	chr5:75680400-75684800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr5:75680400-75684800	Enhancers	HepG2	liver
42	chr5:75680400-75684800	Weak transcription	K562	blood
43	chr5:75680400-75685800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr5:75680600-75680800	Enhancers	Esophagus	oesophagus
45	chr5:75680600-75684200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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