Variant report
Variant | rs73134603 |
---|---|
Chromosome Location | chr3:86280111-86280112 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | MAFF | chr3:86279933-86280291 | K562 | blood: | n/a | chr3:86280109-86280127 |
2 | MAFK | chr3:86279938-86280297 | HepG2 | liver: | n/a | chr3:86280110-86280125 |
3 | MAFK | chr3:86279935-86280290 | Hela-S3 | cervix: | n/a | chr3:86280110-86280125 |
4 | MAFK | chr3:86279913-86280301 | IMR90 | lung: | n/a | chr3:86280110-86280125 |
5 | MAFK | chr3:86279930-86280289 | K562 | blood: | n/a | chr3:86280110-86280125 |
6 | MAFF | chr3:86279925-86280298 | HepG2 | liver: | n/a | chr3:86280109-86280127 |
7 | MAFK | chr3:86279936-86280299 | H1-hESC | embryonic stem cell: | n/a | chr3:86280110-86280125 |
8 | MAFK | chr3:86279784-86280384 | GM12878 | blood: | n/a | chr3:86280110-86280125 |
9 | MAFK | chr3:86279928-86280305 | HepG2 | liver: | n/a | chr3:86280110-86280125 |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
RNU6-1129P | TF binding region |
rs_ID | r2[population] |
---|---|
rs60185522 | 1.00[ASN][1000 genomes] |
rs60908317 | 0.95[ASN][1000 genomes] |
rs73132560 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs73132561 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs73132602 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7642170 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7642263 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9856647 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv877113 | chr3:86205676-86298087 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv877114 | chr3:86257272-86328961 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv965419 | chr3:86275989-86284412 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | n/a |
5 | nsv877115 | chr3:86278951-86554319 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:86277800-86284200 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |