Variant report

Variant	rs73134616
Chromosome Location	chr3:86285508-86285509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73132559	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73132562	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73134621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73134632	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73136353	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73136370	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877114	chr3:86257272-86328961	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86283800-86287000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:86283800-86287000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:86284200-86286600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:86284400-86285600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:86284600-86286000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:86284800-86285800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:86285000-86285800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:86285200-86286200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:86285400-86287000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:86285400-86289000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links