Variant report

Variant	rs73138068
Chromosome Location	chr5:94373016-94373017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1077306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94366400-94374200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94369400-94378200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:94372400-94373600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:94372800-94375600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94372800-94375800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:94372800-94377600	Weak transcription	Stomach Mucosa	stomach
8	chr5:94372800-94379000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:94373000-94375200	Strong transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links