Variant report

Variant	rs73138477
Chromosome Location	chr3:99033555-99033556
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1383841	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1383843	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1383844	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1481519	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1585980	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16840977	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16841002	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16841011	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176819	0.82[ASN][1000 genomes]
rs56658302	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56855047	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60094151	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60416957	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60692326	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6440531	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66744614	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6765606	0.87[AMR][1000 genomes]
rs6768911	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6776746	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6796250	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73138404	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7615723	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642331	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9818711	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99031400-99033600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:99031400-99033600	Enhancers	HUVEC	blood vessel
3	chr3:99032000-99038000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:99032000-99049200	Weak transcription	Aorta	Aorta
5	chr3:99032200-99035800	Weak transcription	Fetal Stomach	stomach
6	chr3:99033000-99036800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:99033000-99038400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:99033200-99036600	Weak transcription	Fetal Lung	lung
9	chr3:99033400-99034800	Weak transcription	NHDF-Ad	bronchial
10	chr3:99033400-99036000	Weak transcription	Osteobl	bone

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