Variant report

Variant	rs73139177
Chromosome Location	chr3:115758505-115758506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10439991	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10934317	0.83[ASN][1000 genomes]
rs12493033	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1920386	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4629329	0.86[ASN][1000 genomes]
rs55813816	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55851212	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6778817	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73139170	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73139180	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73139184	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73139188	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7432754	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7630438	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9289038	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9859789	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv829685	chr3:115643521-115812913	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1001538	chr3:115746561-115791116	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115753200-115765000	Weak transcription	Brain Angular Gyrus	brain
2	chr3:115753800-115758600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:115753800-115767400	Weak transcription	Fetal Lung	lung
4	chr3:115754000-115770400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:115754200-115765400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:115756400-115759600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:115756800-115759600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:115757000-115759000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:115757200-115758600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:115757200-115758800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:115757200-115758800	Enhancers	NHEK	skin
12	chr3:115757200-115759000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:115757200-115759000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:115757200-115759000	Enhancers	HMEC	breast
15	chr3:115757400-115759000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:115757600-115758600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:115757600-115758800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:115757600-115758800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:115757600-115762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:115758000-115759200	Enhancers	GM12878-XiMat	blood
21	chr3:115758000-115772800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:115758200-115759000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:115758200-115759000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:115758200-115759000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:115758200-115759600	Flanking Active TSS	K562	blood
26	chr3:115758400-115758800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:115758400-115759000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr3:115758400-115759400	Enhancers	Monocytes-CD14+_RO01746	blood

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