Variant report

Variant	rs73141942
Chromosome Location	chr3:22977007-22977008
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73141945	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3364617	chr3:22975148-22978146	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22971000-22978400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:22971000-22978800	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:22971200-22979000	Weak transcription	Ovary	ovary
4	chr3:22976000-22978200	Enhancers	Fetal Lung	lung
5	chr3:22976200-22977200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:22976400-22977200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:22976600-22977200	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:22976600-22981800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:22976800-22978200	Weak transcription	Fetal Stomach	stomach
10	chr3:22977000-22977600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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